Plant MITE

SE3020481

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_618
Malus domestica
SE3020481
Mutator
MadM4
MDC004295.157:5842-6016
TATTTGTAA
AGGGTAATGCTAGAGAGATTAAATTTCTAGACTAAATTTGCA

Secondary structure and sequence

TSD TIR

5'

3'

TATTTGTA             A            -CT        TTT   AACTAAA     TGTCATCAATAGGA      -A  TT
        AGGGTAATGCTAG GAGATTAAATTT   AGACTAAA   GCA       TGATG              TTGAGC  TG  
        ||||||||||||| ||||||||||||   ||||||||   |||       |||||              ||||||  ||  A
        TTCCATTACGATC CTCTGATTTAAA   TTTGATTT   TGT       ACTAC              AATTCG  AC  
AATGTTTA             C            ACC        -CC   ACCTTCA     -TAACCAAATAATG      CA  TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020481

TATTTGTAAGGGTAATGCTAGAGAGATTAAATTTCTAGACTAAATTTGCAAACTAAATGATGTGTCATCAATAGGATTGAGCATGTTAATCAACGCTTAAGTAATAAACCAATCATCAACTTCCATGTCCTTTAGTTTCCAAAATTTAGTCTCCCTAGCATTACCTTATTTGTAA

Copy Cancel