Plant MITE

SE3020482

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_619
Malus domestica
SE3020482
Mutator
MadM15
MDC003205.158:42215-42430
TATGTAACT
TATGTAACTGGAAAGGGATCCGGAGAGGATCCCTTCCACCAAATCCACCCAATCACCTAATCCGGGCCCTTGAAATTTGATTTAAAGGCTA

Secondary structure and sequence

TSD TIR

5'

3'

         ACT            -GGA A            C     C          CC                            A     -----   TTATTATAACT
   TATGTA   GGAAAGGGATCC    G GGATCCCTTCCA CAAAT CACCCAATCA  TAATCCGGGCCCTTGAAATTTGATTTAA GGCTA     AAG           
   ||||||   ||||||||||||    | |||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||||| |||||     |||           T
   ATGTAT   CCTTTCCCTAGG    C CCTAGGGAAGGT GTTTA GTGGGTTAGT  GTTAGGTCCGGGAACTTTAAACTAGGTT CCGAT     TCC           
TCA      ---            AGAG -            A     A          TA                            G     GTTTG   CTGGGGAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020482

TATGTAACTGGAAAGGGATCCGGAGAGGATCCCTTCCACCAAATCCACCCAATCACCTAATCCGGGCCCTTGAAATTTGATTTAAAGGCTAAAGTTATTATAACTTTTAAAGGGGTCCCTGTTTGTAGCCGTTGGATCAAATTTCAAGGGCCTGGATTGATTGATTGGGTGAATTTGATGGAAGGGATCCCGAGAGGATCCCTTTCCTATGTAACT

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