Plant MITE

SE3020484

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_621
Malus domestica
SE3020484
Mutator
MadM43
MDC021122.72:12330-12568
GACATATAT
ATATATGGAGGCAGATTGTCTGYGCTYCTGTTTGGGTGYCTTTCTCATCCCCTCCTATTATGTGCGGTCACRGTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

GAC      ---                YG  YC          Y           C        A           R T    MCAYATY             ----GAT        -A  GA
   ATATAT   GGAGGCAGATTGTCTG  CT  TGTTTGGGTG CTTTCTCATCC CTCCTATT TGTGCGGTCAC G TAAG       AACATTTTATATT       TTTTTTAT  GA  
   ||||||   ||||||||||||||||  ||  |||||||||| ||||||||||| |||||||| ||||||||||| | ||||       |||||||||||||       ||||||||  ||  T
   TATATA   CCTCCGTCTAACAGAC  GA  ACAAACCTAC GGAAGAGTAGG GAGGATAA ACACGCCAGTG C ATTC       TTGTAAAATATAA       AAAAAATA  TT  
         CAG                GG  GK          G           A        -           C C    GATGCAG             GAATAAC        GA  AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020484

GACATATATGGAGGCAGATTGTCTGYGCTYCTGTTTGGGTGYCTTTCTCATCCCCTCCTATTATGTGCGGTCACRGTTAAGMCAYATYAACATTTTATATTGATTTTTTTATAGAGATAATTAGATAAAAAACAATAAGAATATAAAATGTTGACGTAGCTTACCCGTGACCGCACAAATAGGAGAGGATGAGAAGGGCATCCAAACAKGAGGGCAGACAATCTGCCTCCGACATATAT

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