SE3020485

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_622
  • Malus domestica
  • SE3020485
  • Mutator
  • MadM64
  • MDC004219.393:6482-6696
  • CTTAATGTA
  • GGAATTGGATCCCCTCCTGAGCAAATGGTAGGATCCTCATGACCACACAACACGGGCCGTTAGATTTTGATCCAACGGTTACAAACAGGGAGTTTCTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTAATGTA                             -A                         G C   A          C           ------------AC     G
         GGAATTGGATCCCCTCCTGAGCAAATGGT  GGATCCTCATGACCACACAACACGG C GTT GATTTTGATC AACGGTTACAA              AGGGA 
         |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | ||| |||||||||| |||||||||||              ||||| T
         CCTTAACCTAGGGGAGGACTCGTTTACCA  CCTAGGAGTACTGGTGTGTTGTGCC G CAA CTAAAACTAG TTGCCGATGTT              TCTCT 
ATGTAATTC                             CC                         - A   C          T           AATAATATTAAAAA     T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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