SE3020488

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_625
  • Malus domestica
  • SE3020488
  • Mutator
  • MadM41
  • MDC017731.273:28759-28975
  • TAAGAATTT
  • GAATTTGGATTTGGATCCTCTCCTGAGCTAATGGAGAGGATCCTCCTGACCAATCATCTTGYGCCGTTAGATTTTTATCCAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA      ---                              A                     T  Y      A              AATTACAAA      GGTCTCTTTAA
   GAATTT   GGATTTGGATCCTCTCCTGAGCTAATGGAG GGATCCTCCTGACCAATCATC TG GCCGTT GATTTTTATCCAAC         TAAGGG           
   ||||||   |||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||| ||||||||||||||         ||||||           A
   TTTAAG   CCTAAACCTAGGAGAGGACTCGATTATCTC CCTAGGAGGACTGGTTAGTAG AC CGGTAA CTAAAAATAGGTTG         CAATAT           
         AAT                              A                     C  C      C              --------C      TAATAATATTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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