SE3020489

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_626
  • Malus domestica
  • SE3020489
  • Mutator
  • MadM43
  • MDC021421.104:10162-10399
  • AACTGGAAC
  • CTGGAACGGACTTGGATTCTCTGCCCTCCCCATCTCATGCCCTTCCTATGTCCTCCTATATTCTGTGGTCACGATTAAACCACGTTAACATTTTATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
 AA    AAC   C       C        C        A        C             A  C          A    A         C          GATTTTTTATAGAAATAA
   CTGG   GGA TTGGATT TCTGCCCT CCCATCTC TGCCCTTC TATGTCCTCCTAT TT TGTGGTCACG TTAA CCACGTTAA ATTTTATATT                  
   ||||   ||| ||||||| |||||||| |||||||| |||||||| ||||||||||||| || |||||||||| |||| ||||||||| ||||||||||                  T
   GGTC   CCT AACCTAA AGACGGGA GGGTAGAG ATGGGAGG GTACGGGAGGATA AA ACACCAGTGC AATT GGTGCAGTT TAAAATATAA                  
CAA    -AA   A       C        A        A        A             -  T          C    C         A          GAGTAATGAAAAACAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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