SE3020498

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_635
  • Malus domestica
  • SE3020498
  • Mutator
  • MadM13
  • MDC012597.1635:6477-7218
  • TTTTCATTG
  • GGGAAATTTTATTTAGACCCATTTATCCTCTTTCTACACCCAACTTATTATTTTTTATTTTTAAATTCCAAATGTGCCCAATAATTCTCTTTCTACACCCAACAAGAACAAAAAAATAATAATAATTTAACAATAGGCAACTCCAGCCATCTTATCTCTTCAAACCTCAACCACCTAGTTTCTAACCTCTCCAACTCCCCACCGCCACCTCCCTTACCACCCACAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTCATT                   C      C      C  C   C       TA       T    -       A   G            C              ------AC           A    -TA    ---       A    CAA   CA     C     T          C       --         -A                      C  CC    C         CAAT    A   TAGAACAGTATTCCCAACAACCCCCAATTAAAAAAACCCAAAARAAACATGTCAATATTTTTTTTCTTTTTTTTTTTGGAAAAATTAATGGTATTATTAACGTATGGTCCAACACAATT
        GGGAAATTTTATTTAGACC ATTTAT CTCTTT TA ACC AACTTAT  TTTTTTA TTTT AAATTCC AAT TGCCCAATAATT TCTTTCTACACCCA        AAGAACAAAAA ATAA   ATAA   TTTAACA TAGG   CTC  GCCAT TTATC CTTCAAACCT AACCACC  TAGTTTCTA  CCTCTCCAACTCCCCACCGCCA CT  CTTA CACCCACAA    TTGG AAT                                                                                                                       
        ||||||||||||||||||| |||||| |||||| || ||| |||||||  ||||||| |||| ||||||| ||| |||||||||||| ||||||||||||||        ||||||||||| ||||   ||||   ||||||| ||||   |||  ||||| ||||| |||||||||| |||||||  |||||||||  |||||||||||||||||||||| ||  |||| |||||||||    |||| |||                                                                                                                       A
        CCCTTTAAAATAAGTCTGG TAAATA GAGAAA AT TGG TTGAATA  AAAAAAT AGAA TTTAAGG TTA ACGGGTTGTTAA AGAAAGATGTGGGT        TTCTTGTTTTT TATT   TATT   AGGTTGT ATCT   GGG  CGGTA GGTAG GAGGTTTGGG TTGGTGG  GTTAAAGAT  GGAGGGGTTGGGGGGTGGCGGT GA  GAAT GTGGGTGTT    TTGG GGG                                                                                                                       
TTACTTTT                   A      A      A  A   A       TC       T    C       C   G            A              ATCACTTT           A    TTA    TTA       G    TCA   CC     C     T          A       CG         GG                      A  -A    A         -ACT    -   TTTCTAGAATCAGTAGTTACAGGTAAAGGACTGGAAAGCGGCCGGTGTGTTATCGAGAGAGAAGGTACGTCAGGAAGATTGTACAGACTTAATACGGCTTTAACAACTGCACAGYTTAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End