Plant MITE

SE3020500

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_637
Malus domestica
SE3020500
Mutator
MadM57
MDC026059.39:306-565
TTAAGTAAT
TTAAGTAATGGATTTGGATCCTCGCTAGATCCCCTCCCTGGGGATCCTAAGGATCAACGAACACGGACCGTTGATCAAAAATTGTGTGGCCACAATT

Secondary structure and sequence

TSD TIR

5'

3'

    AG   T             C    G                     A                         C             -  A     TTTA       T        -CAC C      AT
 TTA  TAA GGATTTGGATCCT GCTA ATCCCCTCCCTGGGGATCCTA GGATCAACGAACACGGACCGTTGAT AAAAATTGTGTGG CC CAATT    TCTTTTT ATATTTTT    G AAAACG  
 |||  ||| ||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||    ||||||| ||||||||    | ||||||   
 AAT  ATT CCTAAACCTAGGA CGGT TAGGGGAGGGACTCCTAGGAT CCTAGTTGCTTGTGTCTGGCAACTA TTTTTAACACACC GG GTTAA    AGAAAAA TATAAAAA    C TTTTGT  
G   GA   -             A    A                     C                         A             A  -     TTTA       -        TTTT A      TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020500

TTAAGTAATGGATTTGGATCCTCGCTAGATCCCCTCCCTGGGGATCCTAAGGATCAACGAACACGGACCGTTGATCAAAAATTGTGTGGCCACAATTTTTATCTTTTTTATATTTTTCACGCAAAACGATGTTGTTTTACTTTTAAAAATATAAAAAGAATTTAATTGGGACCACACAATTTTTAATCAACGGTCTGTGTTCGTTGATCCCTAGGATCCTCAGGGAGGGGATATGGCAAGGATCCAAATCCTTAAGTAAG

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