SE3020503

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_640
  • Malus domestica
  • SE3020503
  • Mutator
  • MadM15
  • MDC019268.164:8235-8450
  • ATTTGAACT
  • TTTGAACTGGGAAGAGATCTCCTCTGAATCTCTCCCACTAAGTCCTAGGGATCCAGAGATCTAGACCCTTGAAATTTGATCAAACGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
 A      C                   A                          CA          CC              A        CAATTATTATAACTTT    G  AA
  TTTGAA TGGGAAGAGATCTCCTCTG ATCTCTCCCACTAAGTCCTAGGGATC  GAGATCTAGA  CTTGAAATTTGATC AACGGCTA                TAGA GG  
  |||||| ||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||  |||||||||||||| ||||||||                |||| ||   
  AAGTTT ACCCTTCTCTAGGGGAGGC TAGAGAGGGTGGTTTAGGATCCCTAG  CTCTAGATCT  GAACTTTAAATTAG TTGCCGAT                ATTT TC  
TC      -                   C                          AC          AA              G        ----------------    G  CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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