SE3050504

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_641
  • Malus domestica
  • SE3050504
  • PIF/harbinger
  • MadP6
  • MDC020847.239:17582-17882
  • TTA
  • AGGTACCGTTTGGTACG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     C           CAGAC      A  CAT                A  GGACAGAACGGA      GA ---  AAATATTGAAAAAGATAAGGAAAAATTTTGTCATAAAATGTTATAAATTTGTGTTCCACGGATGTGGAACGGGTCRT
  AGGTA CGTTTGGTACG     GGGACG GA   GACGGAACAGGACGGG CG            ACGGAT  T   GT                                                                             
  ||||| |||||||||||     |||||| ||   |||||||||||||||| ||            ||||||  |   ||                                                                             T
  TCCAT GCAAACCATGC     CCCTGC CT   CTGCCTTGTCCTGCTC GC            AGGGTG  C   CC                                                                             
AT     R           ----A      C  ACY                K  -------AAGGM      -- ATA  ACGTGGATTTTTGACACCTTGCCCAACRGRGTACYCTRCTTTAAACCAACTAAAAAACAAGGTGGAAAAGGGGGACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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