Plant MITE

SE3020505

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_642
Malus domestica
SE3020505
Mutator
MadM5
MDC021125.349:18606-18791
TACTTTTGG
GGAGAAATTTTTTATTGTGACGGGAATATGGATGGTACACAACGTGTTTTTATATAAGTCGTGGGA

Secondary structure and sequence

TSD TIR

5'

3'

TACTTTT     A        T      G  A    -  A        A       T          C      AATTTTATTTTTT     A
       GGAGA ATTTTTTA TGTGAC GG ATAT GG TGGTACAC ACGTGTT TTATATAAGT GTGGGA             AAGTT 
       ||||| |||||||| |||||| || |||| || |||||||| ||||||| |||||||||| ||||||             ||||| T
       CCTCT TAAAAAAT ACACTG CC TATG CC ACCATGTG TGTACAG GATATGTTTA CACCCT             TTCAA 
TTTTCAT     C        C      G  A    T  C        G       T          A      ATACACACAATTT     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020505

TACTTTTGGAGAAATTTTTTATTGTGACGGGAATATGGATGGTACACAACGTGTTTTTATATAAGTCGTGGGAAATTTTATTTTTTAAGTTATTAACTTTTTAACACACATATCCCACAATTTGTATAGTGACATGTGGTGTACCACCCTGTATACCGGTCACACTAAAAAATCTCTCCTACTTTT

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