SE3050506

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_643
  • Malus domestica
  • SE3050506
  • PIF/harbinger
  • MadP7
  • MDC013217.264:1144-1382
  • TAA
  • AGTGCTTGTTTGGAAGTGCTTTAAAATGACTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  T                   -      A   AAAAT      A  -    C          TT            GAAGTGCCTCTTAGAAAAAAACACCAATTATGTGCTTCTCCC
  AG GCTTGTTTGGAAGTGCTTT AAAATG CTG     GCTTTT GA GAAA TGTTTTTGGG  CCAAAAGCACTT                                          
  || ||||||||||||||||||| |||||| |||     |||||| || |||| ||||||||||  ||||||||||||                                          A
  TC CGAACAAACCTTCATGAAA TTTTAC GAT     CGAAAA CT CTTT ACAAAAATCT  GGTAATGAATCA                                          
AA  C                   A      A   GTATT      -  A    T          -T            TTTTTGCGTTCATTTAGGACTTTTTTGTGAACTTCACGAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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