Plant MITE

SE3020509

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_646
Malus domestica
SE3020509
Mutator
MadM15
MDC018306.234:11502-11716
CATAAAGCA
GGAAAGGGATCTTCTCCGGATCCCTTCCTCCTAATCCACCAAATTAGGGGATCTGTGCCGTTGAAATTTGATCCAACGACT

Secondary structure and sequence

TSD TIR

5'

3'

CATAAAGCA               CC            C                           C              CC       -    --  ATTATAACTTT
         GGAAAGGGATCTTCT  GGATCCCTTCCT CTAATCCACCAAATTAGGGGATCTGTG CGTTGAAATTTGAT  AACGACT GAAG  TT           
         |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||  ||            
         CCTTTCCCTAGGAGA  CCTAGGGAAGGA GATTAGGTGGTTTAGTTCCTTAGACAC GCAACTTTAAACTA  TTGTTGA GTTT  CC           
ACAAAATAC               --            A                           A              AT       T    GT  CCGGGTGAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020509

CATAAAGCAGGAAAGGGATCTTCTCCGGATCCCTTCCTCCTAATCCACCAAATTAGGGGATCTGTGCCGTTGAAATTTGATCCAACGACTGAAGTTATTATAACTTTTAAAGTGGGCCCCTGTTTGTAGTTGTTTAATCAAATTTCAACGACACAGATTCCTTGATTTGGTGGATTAGAAGGAAGGGATCCAGAGGATCCCTTTCCCATAAAACA

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