Plant MITE

SE3020511

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_648
Malus domestica
SE3020511
Mutator
MadM15
MDC000005.501:2257-2472
ATTAAAATA
GGAAAGGGATCTTTTCTGAATTCCTTCATTTTAATCCACCAAATCAGGAAATCTGTGTCATTAAAATTTGATC

Secondary structure and sequence

TSD TIR

5'

3'

ATTAAAATA                  A        A       C            A   C  T      A                 TGAAGTTATTATAACTCTT
         GGAAAGGGATCTTTTCTG ATTCCTTC TTTTAAT CACCAAATCAGG AAT TG GTCATT AAATTTGATCTAATGAC                   
         |||||||||||||||||| |||||||| ||||||| |||||||||||| ||| || |||||| |||||||||||||||||                    
         CCTTTCCCTAGGAGAGGC TAGGGAAG AGAATTA GTGGTTTAGTCC TTA GC CGGTAA TTTAAACTAGTTTGCCG                   
AAAAAATTA                  C        G       A            C   A  T      C                 ATGTTTGTCCCCCGGTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020511

ATTAAAATAGGAAAGGGATCTTTTCTGAATTCCTTCATTTTAATCCACCAAATCAGGAAATCTGTGTCATTAAAATTTGATCTAATGACTGAAGTTATTATAACTCTTAAATGGCCCCCTGTTTGTAGCCGTTTGATCAAATTTCAATGGCTCGAATTCCCTGATTTGGTGAATTAAGAGGAAGGGATCCGGAGAGGATCCCTTTCCATTAAAAAA

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