SE3020512

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_649
  • Malus domestica
  • SE3020512
  • Mutator
  • MadM39
  • MDC022569.33:30009-30223
  • TGTTTTAAC
  • GTTTTAACGGACATGGATCCTCTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
T   TT   -                 AAAACCA                    C              T                         TTATTATA    T
 GTT  AAC GGACATGGATCCTCTTC       ATTGTCCTAATTTTAGGGAT CATTAATTCGGACC TTGAAATTTGATCAAACGGTTAAAT        ACTT 
 |||  ||| |||||||||||||||||       |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||        |||| T
 CAA  TTG CCTGTACCTAGGAGAGG       TAACAGGATTAGAATCCCTA GTAGTTAGGCCTGG AACTTTAAACTAGTTTGCTGATTTG        TGAA 
    TT   T                 CCTAGAG                    T              C                         TCTCTGAG    A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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