SE3020514

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_651
  • Malus domestica
  • SE3020514
  • Mutator
  • MadM100
  • MDC001559.435:28400-28613
  • TTCATTTTC
  • GGAGATGGATTGTTTGCCCTCCTTTCTCCATACCCTCCTGTTTTGTGCTGTCACGGTTAAGCCACGTCAACATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCATTTTC     T                  -----------       A                T              ACG         GCTTTTTGTCT     T    AT
         GGAGA GGATTGTTTGCCCTCCTT           TCTCCAT CCCTCCTGTTTTGTGC GTCACGGTTAAGCC   TCAACATTT           TATTA TTTT  
         ||||| ||||||||||||||||||           ||||||| |||||||||||||||| ||||||||||||||   |||||||||           ||||| ||||  A
         CCTCT CCTAACAGACGGGAGGAG           AGGGGTA GGGAGGACAAAACACG CAGTGCCAATTCGG   AGTTGTAAA           ATAAT AAAA  
CTTTTACTT     T                  AAAGGTATGAG       C                C              ---         ---------AT     T    AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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