SE3020516

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_653
  • Malus domestica
  • SE3020516
  • Mutator
  • MadM41
  • MDC015426.248:1546-1761
  • TTTGAAAAC
  • GGATTTGGATCCTCTTCTGAGCCCAATGAGAGGATCCTCCTGACCAAGGAGTGTGAACCGTTGGATTTTCATCCAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTGAAAAC           CTC            T                            AAC                   AACTACAAAC    GGTCCCTTTAAA
         GGATTTGGATC   TTCTGAGCCCAA GAGAGGATCCTCCTGACCAAGGAGTGTG   CGTTGGATTTTCATCCAAC          AGGG            
         |||||||||||   |||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||          ||||            G
         CCTAAACCTAG   AGGACTCGGGTT CTCTCCTAGGAGGACTGGTTCTTCACAC   GCAACCTAAAAGTAGGTTG          CAAT            
CAAAAGTTT           TAA            C                            CCA                   ---------C    ATTAATAATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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