SE3020517

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_654
  • Malus domestica
  • SE3020517
  • Mutator
  • MadM32
  • MDC011786.423:8789-8973
  • TTTAATTTA
  • AGGGTAATGTTAGGGAGACCAAAATTTTTAAACCAAATTTGCAAACCAAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAATTT                       AT             T  C    C     ATATGGTT       ATTGGACTATTAACTAAATGTC
        AGGGTAATGTTAGGGAGACCAAA  TTTTAAACCAAAT TG AAAC AAATG        GTTGATG                      
        |||||||||||||||||||||||  ||||||||||||| || |||| |||||        |||||||                      G
        TCCCATTACAATCCCTCTGGTTT  AAAATTTGGTTTA AC TTTG TTTAC        TGAGTAA                      
ATTTAATT                       --             C  A    A     --------       TTGTTCTTTGTTCGTGRAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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