Plant MITE

SE3020524

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_661
Malus domestica
SE3020524
Mutator
MadM4
MDC011223.229:11415-11602
TTCTTTTTA
AGGGTAATACTAGGGAGACTAAATTTATACATAAAATTTTGTAAATTAAATGACATG

Secondary structure and sequence

TSD TIR

5'

3'

TTCTTTTT        A    GG   C       A  C         T             C   AA G       -- TGGATTATTACTCAAGT
        AGGGTAAT CTAG  AGA TAAATTT TA ATAAAATTT GTAAATTAAATGA ATG  A TTGATGA  T                 
        |||||||| ||||  ||| ||||||| || ||||||||| ||||||||||||| |||  | |||||||  |                  
        TCCCATTA GATC  TTT ATTTAAA AT TGTTTTAAA CGTTTGATTTACT TAC  T AGTTATT  T                 
ATTTTTCT        C    AT   A       C  C         -             A   AG -       CT ACTCYTGTAAATAATTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020524

TTCTTTTTAGGGTAATACTAGGGAGACTAAATTTATACATAAAATTTTGTAAATTAAATGACATGAAAGTTGATGATTGGATTATTACTCAAGTGTTAATAAATGTYCTCATTCTTATTGATGACATATCATTTAGTTTGCAAATTTTGTCTACAAATTTAATTTTACTAGCATTACCCTTCTTTTTA

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