SE3020525

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_662
  • Malus domestica
  • SE3020525
  • Mutator
  • MadM7
  • MDC021912.336:52442-52658
  • CACTATTTT
  • GGAATTGGATGCTCTCATGAGCACAAGCTCAGGATCCTGCTGACCATTCCACGTGAGCCGTTGGATTTTGATCCAACGACTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CACTATTTT          G     A                     G       TTC         C              C    A      -ACAG     CCCTT
         GGAATTGGAT CTCTC TGAGCACAAGCTCAGGATCCT CTGACCA   CACGTGAGC GTTGGATTTTGATC AACG CTACAA     ATGAT     
         |||||||||| ||||| ||||||||||||||||||||| |||||||   ||||||||| |||||||||||||| |||| ||||||     |||||      
         CCTTAACCTA GAGAG ACTCGTGTTCGAGTTCTAGGA GACTGGT   GTGCACTCG CAACCTAAAACTAG TTGC GATGTT     TATTG     
TTTTATCAC          G     G                     G       CGA         A              T    C      AATAA     AAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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