SE3020526

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_663
  • Malus domestica
  • SE3020526
  • Mutator
  • MadM43
  • MDC010513.283:1241-1478
  • AAATATTAT
  • ATATTATGGACAAGGATTGTCTGCCCTCCTTGTTCCCGTGCCTTTTCGTGTCTTCCTGTTTTGTGTGGTCACGATTAAGCCACGCCAACATTTTATATTGTTTTTTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
 AA     A                                                       T           A          C                 -----       AGAGAT
   ATATT TGGACAAGGATTGTCTGCCCTCCTTGTTCCCGTGCCTTTTCGTGTCTTCCTGTTT GTGTGGTCACG TTAAGCCACG CAACATTTTATATTGTT     TTTTTAT      
   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||     |||||||       
   TATAA ACCTGTTCCTAACAGACGGGAGGAACAAGGGCACGGGAGGGTACGGGAGGACAAA CACACCAGTGC AATTCGGTGC GTTGTAAAATATAATGA     AAAAATA      
TAC     -                                                       -           C          A                 TAAGC       GAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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