Plant MITE

SE3020527

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_664
Malus domestica
SE3020527
Mutator
MadM53
MDC000946.219:8785-9001
AACATAAAC
GGAAGAGGATCCTCTCCTGAGCTCAGGATGAGGATCCTCCTYACCACGAAATTTAGACCGTTCAAATTTAATTTAACGATTGCAATTATTATAATTTTTAGAGAATCCTTCTATTTGGAGTCGTTGGATTAAATTTGAATGGTCCGGATTTTGTGATAAGGAGGATTCCCATCCTGAGCTCAGCAGATGATCCTCTTCC

Secondary structure and sequence

TSD TIR

5'

3'

AACATAAAC           C   C              A          YAC          A                          G   T  TT TA     T
         GGAAGAGGATC TCT CTGAGCTCAGGATG GGATCCTCCT   CACGAAATTT GACCGTTCAAATTTAATTTAACGATT CAA TA  A  ATTTT 
         ||||||||||| ||| |||||||||||||| ||||||||||   |||||||||| |||||||||||||||||||||||||| ||| ||  |  ||||| A
         CCTTCTCCTAG AGA GACTCGAGTCCTAC CTTAGGAGGA   GTGTTTTAGG CTGGTAAGTTTAAATTAGGTTGCTGA GTT AT  T  TAAGA 
CAAATACAA           T   C              C          ATA          C                          G   T  CT CC     G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020527

AACATAAACGGAAGAGGATCCTCTCCTGAGCTCAGGATGAGGATCCTCCTYACCACGAAATTTAGACCGTTCAAATTTAATTTAACGATTGCAATTATTATAATTTTTAGAGAATCCTTCTATTTGGAGTCGTTGGATTAAATTTGAATGGTCCGGATTTTGTGATAAGGAGGATTCCCATCCTGAGCTCAGCAGATGATCCTCTTCCAACATAAAC

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