SE3050528

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_665
  • Malus domestica
  • SE3050528
  • PIF/harbinger
  • MadP2
  • MDC016075.340:702-1373
  • TTA
  • AGAGCAACTCCAGCGTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TT            G G   ----       C -    GGATAGGCGAAGAGAAAGGGCCCGACAGCCAGAGGATGGGGCTCCAGCGTATGCGAGCTCGAGGGACAGGTCAGGCCCGAGCGACAGGCCCGGCGGGGATTGCCAGCTCGAGAGCCTAAGGGCTGTGTGATGTATGGCTGATGTGCGGCATTGGTGCATGCACTCAGTGTTCTCTGCGTCCTCCTTCCCTTCCTTGCCTTCCTTCCCCTCCAGCTTTGACGAGGATAATAACGGATCTGGGCCGTTCGATGGAGAGCACAAAATCGCGAGGGTTGTAGACGGAGATTGGAAACCCTTTCTC
  AGAGCAACTCCA C TTG    CTGGTTG T CGGG                                                                                                                                                                                                                                                                                                             
  |||||||||||| | |||    ||||||| | ||||                                                                                                                                                                                                                                                                                                              
  TCTCGTTGAGGT G AAC    GGAGGGG A CCGT                                                                                                                                                                                                                                                                                                             
AT            G G   CTCG       - A    TAGGTGATAAGTTAGGTGGATCACTTGTCATTGATGGGAATTATTTGTCATTAACGGTAAACGTAGAGGTGTGAACCTTGGGAGGGGGACCGTTAACTATTATTTTATAATTATAAAAAAAGAGTGGTTTAGGTATTTTATAATAATAAAAAGGGATTAAAACTGGCCAGGGGGGAAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGTGTCGTCGTCGGTACCTTCGAAGTGGTCGAGACAGCGTGTATCCGAACCGTCCGGAGCGGCAGTACCCCGTTTTAGAGTGGGAGTTGTAGCAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End