SE3020538

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_675
  • Malus domestica
  • SE3020538
  • Mutator
  • MadM43
  • MDC009117.219:5427-5657
  • CATCAAAGG
  • GGGAGGAGGATTTTCTCCTCCTTTTTTCCCATACACTTTCATCCTCTTCCTGTTTGTGTGGTCACGGTTAAGCCATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CATCAAAG                           -               C  C                                CAACATT    A   ATTTTTTTAAGACA
        GGGAGGAGGATTTTCTCCTCCTTTTTT CCCATACACTTTCAT CT TTCCTGTTTGTGTGGTCACGGTTAAGCCATGT       TTAC TTG              
        ||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||       |||| |||              A
        CCCTCCTCCTAAGAGAGGAGGAAAAAA GGGTATGTGAAGGTA GA AGGGACAAACACATCAGTGCCAATTTGGTGCA       AATG CCA              
GGAAACTA                           A               A  A                                CAAAAAC    -   ATTTGGTGCACAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3