Plant MITE

SE3020539

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_676
Malus domestica
SE3020539
Mutator
MadM105
MDC022127.167:5293-5456
TAAACACAG
AGGGTGGTGCTATCAACACACCCCTTTTTACCTCCCATACACCCTTCTCAATTT

Secondary structure and sequence

TSD TIR

5'

3'

TAAACAC             CAA        -       C         -C   -----------------------   -      CCMGCCGTC
       AGGGTGGTGCTAT   CACACCCC TTTTTAC TCCCATACA  CCT                       TCT CAATTT         
       |||||||||||||   |||||||| ||||||| |||||||||  |||                       ||| ||||||          
       TCCCATCACGATA   GTGTGGGG AAAAATG AGGGTGTGT  GGA                       AGA GTTAAG         
ACACAAA             --A        T       A         AA   ACAATTATAAACAGGAAACTAAA   A      TAAYYCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020539

TAAACACAGGGTGGTGCTATCAACACACCCCTTTTTACCTCCCATACACCCTTCTCAATTTCCMGCCGTCAAACYYAATGAATTGAAGAAAATCAAAGGACAAATATTAACAAGGAATGTGTGGGAAGTAAAAATGGGGTGTGAATAGCACTACCCTAAACACA

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