Plant MITE

SE3020540

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_677
Malus domestica
SE3020540
Mutator
MadM106
MDC007193.570:826-1033
CAAGAAGGA
GGATTTGGATCCTCTTCGAGGCAATTGGTCGGATCCTTCTGAACAGTGTTTGTGGACTGTTGGATTTTTATCCAACGGCTACAAATATAGGT

Secondary structure and sequence

TSD TIR

5'

3'

CAAGAA                                -          A                                   C     ---A     G CCTC
      GGATTTGGATCCTCTTCGAGGCAATTGGTCGG ATCCTTCTGA CAGTGTTTGTGGACTGTTGGATTTTTATCCAACGG TACAA    TATAG T    
      |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||    ||||| |     
      CCTAAACCTAGGAGAAGCTCCGTTGACCAGCC TAGGAGGACT GTCACAAGCACCTGGCAATTTAAAAATAGGTTGCT ATGTT    ATATT A    
AAGAAC                                C          G                                   A     AGTA     G AAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020540

CAAGAAGGATTTGGATCCTCTTCGAGGCAATTGGTCGGATCCTTCTGAACAGTGTTTGTGGACTGTTGGATTTTTATCCAACGGCTACAAATATAGGTCCTCTAAAAGTTATAATGATTGTAATCGTTGGATAAAAATTTAACGGTCCACGAACACTGGTCAGGAGGATCCCGACCAGTTGCCTCGAAGAGGATCCAAATCCCAAGAA

Copy Cancel