SE3030543

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_680
  • Malus domestica
  • SE3030543
  • hAT
  • Madh15
  • MDC007989.270:8594-8983
  • ATTCACTT
  • TCAAGGACGGAGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTCACT      A        ------        TT    TGGGGGCGTCCTAAAACAAAAGGGTCAGGTACAATGAAAAATCTCTAAATTAAAAAGTTAAATATTAAATTGTAATGCCACAAACAAATGGATGAAGTAAATTCATATAAAATACTTTGCAGAGTAAAATTTTTATAGCAAGTTATGATACTTCATC
       TCAAGG CGGAGCTA      GAAATGTT  TGAC                                                                                                                                                             
       |||||| ||||||||      ||||||||  ||||                                                                                                                                                              
       AGTTCC GCCTCGAT      CGGGTCTC  CCCC                                                                                                                                                             
TTCACTT      C        GGATTC        --    MTAGGCGGGGGTGAGTCTAAAAACCCGCTACTTTTTTTAACAGTACTGTTAATTTTGTTGTTAATTTAAAAACTAAAACCAAGCCTTATAAGGTGTAAAAGATTGGATTTAGTTTGAGTTAACTTAACCCCCAAAGTATTTATCTAACCTAAGTTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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