SE3020547

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_684
  • Malus domestica
  • SE3020547
  • Mutator
  • MadM14
  • MDC019904.424:2774-3186
  • TATTTATAC
  • TATTTATACGAGTAAATTGTAGCAATGGTACCTCAACTTTAATCAAATTGGAGCAATGGTCCCTCAACTAAAAATATATTACCATTGGTCCTTCAACTCATCAAAACGTTTAGCTATGGTC

Secondary structure and sequence

TSD    TIR
5'



3'
    TT   C            G       A      C      CA        C      C              A              C                  T           ATTTTTGT  -    CGTCA    TT   CAA --   AGTTATGTTGGAAGGATCATTGCTACAATTGGGTTAAAGTTGAGAGACCATTGCTAC
 TAT  ATA GAGTAAATTGTA CAATGGT CCTCAA TTTAAT  AATTGGAG AATGGT CCTCAACTAAAAAT TATTACCATTGGTC TTCAACTCATCAAAACGT TAGCTATGGTC        CA ACTT     CAAT  TGT   A  ATG                                                         
 |||  ||| |||||||||||| ||||||| |||||| ||||||  |||||||| |||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||        || ||||     ||||  |||   |  |||                                                          
 ATA  TAT CTCATTTAACAT GTTATCA GGAGTT AAATTG  TTAACCTC TTACCA GGAGTTGATTTTTA GTAATGGTAACCAG GAGTTGAGTAGTTTTGCA GTTGATATCAG        GA TTGA     TTTT  AGT   T  TGG                                                         
C   TT   -            A       G      A      AG        A      T              G              A                  C           -------G  G    -----    -T   --- AA   TTACCAAGGATTTGAAATTAGGTTGATCTCTTTACCAGGTAGTTGAAATTGGGTTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End