SE3020556

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_693
  • Malus domestica
  • SE3020556
  • Mutator
  • MadM11
  • MDC009763.455:24142-24304
  • ATAGCTTAG
  • AGCTTAGGGGTGTGATATCYATATRCCTTTTTTAYTTCTTTCACAC

Secondary structure and sequence

TSD    TIR
5'



3'
AT    TA        A    Y    R  -       Y      C    ------------ATT   AATTTTCGGCCGTCARATCGG
  AGCT  GGGGTGTG TATC ATAT CC TTTTTTA TTCTTT ACAC               TTT                     
  ||||  |||||||| |||| |||| || ||||||| |||||| ||||               |||                      
  TCGA  CCCCACAC ATAG TGTG GG GAAAAAT AAGAGA TGTG               TAG                     
AT    TA        G    G    T  T       G      R    GGGAACAATTAAAGA   TAAACTAGAARAAATTAAGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End