Plant MITE

SE3020563

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_700
Malus domestica
SE3020563
Mutator
MadM41
MDC017674.419:2974-3190
TGTAGGCTG
GGCTGGGATTTGGATCCTCTCCTGAGCCCAAAGAGAGGATCCTTCTGACCAAGACACGTGGACCGTTAAATTTTTATCCAACGGTTACAAATA

Secondary structure and sequence

TSD TIR

5'

3'

TGTA    ---                 C         A        C       C     C      A     AA         C        C  A  GAGA      T
    GGCT   GGGATTTGGATCCTCTC TGAGCCCAA GAGAGGAT CTTCTGA CAAGA ACGTGG CCGTT  ATTTTTATC AACGGTTA AA TA    GATTTT 
    ||||   ||||||||||||||||| ||||||||| |||||||| ||||||| ||||| |||||| |||||  ||||||||| |||||||| || ||    |||||| T
    TCGG   TCCTAAACCTAGGAGAG ACTCGGGTT CTCTCCTA GAGGACT GTTTT TGCACC GGCAA  TAAAAGTAG TTGCCGAT TT AT    TTAAAA 
   G    ATG                 T         C        A       A     A      C     CC         T        A  A  AATA      T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020563

TGTAGGCTGGGATTTGGATCCTCTCCTGAGCCCAAAGAGAGGATCCTTCTGACCAAGACACGTGGACCGTTAAATTTTTATCCAACGGTTACAAATAGAGAGATTTTTTTAAAATTATAATAATTATAGCCGTTTGATGAAAATCCAACGGCCCACGTATTTTGATCAGGAGAATCCTCTCCTTGGGCTCATGAGAGGATCCAAATCCTGTAGGCTG

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