SE3050564

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_701
  • Malus domestica
  • SE3050564
  • PIF/harbinger
  • MadP9
  • MDC012581.404:3067-3283
  • TTA
  • TAGGGCTAGTTTGGTATTGTTGTGCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
T    -   A       A   TT       -------------       AAACTGCTTCT     ACTA  --     ----    TCATTTCTGCTGCTTCACGTTTTCAACATTTTTTTTCAC
 TAGG GCT GTTTGGT TTG  GTGCTTT             GAAAAAA           GATGT    TG  AGAAT    AAGC                                       
 |||| ||| ||||||| |||  |||||||             |||||||           |||||    ||  |||||    ||||                                       C
 ATTC TGA CAAACCA GAC  CACGAAA             ATATTTT           TTTCG    AC  GAGTT    CACA                                       
     A   C       C   TC       ATATTTTTCACCC       -----------     ----  TC     TTTA    AACCATTTGTGAATTTTTGTTGAATAAAAGTATCAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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