SE3020570

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_707
  • Malus domestica
  • SE3020570
  • Mutator
  • MadM15
  • MDC005930.417:19533-19751
  • GTGTTTAAT
  • ATGGGAAGAGATCATCTCCGGATCTCTCCCACCTAAGCCTAGGGATCAAGTGATCCGGGCTCTTGAAATTTGATCCAACGGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTGTTTA             --A      G      C                                                        CAATTATTATAACTTTT    G  TC
       ATGGGAAGAGATC   TCTCCG ATCTCT CCACCTAAGCCTAGGGATCAAGTGATCCGGGCTCTTGAAATTTGATCCAACGGTTA                 AGAA GG  
       |||||||||||||   |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||| ||   
       TGCCCTTCTCTAG   AGAGGT TAGAGA GGTGGATTCGGATCCCTAGTTCACTAGGCCCGGGAACTTTAAACTAGGTTGCCGAT                 TTTT TC  
TAACTTG             GAG      K      A                                                        -----------------    G  TC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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