Plant MITE

SE3050571

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_708
Malus domestica
SE3050571
PIF/harbinger
MadP6
MDC000945.197:2612-2892
TAA
AGGGTGCGTTTGGTACGCAGACGGGAC

Secondary structure and sequence

TSD TIR

5'

3'

TA                 -CA        AGAAC            A    A     AATTTTTGAAA      TGGGGTATATTTGTCTTAAAATGGTAAAACATTGTGTTCCACAGACGTGGAACAAACCCGTTCCAGGGGGGAG
  AGGGTGCGTTTGGTACG   GACGGGAC     GGGACGGGACGG ACGA GGTGT           AAGACA                                                                         
  |||||||||||||||||   ||||||||     |||||||||||| |||| |||||           ||||||                                                                         A
  TCCCACGCAAACCATGC   CTGCCCTG     CCCTGCCTTGCC TGCT CCGCA           GCAGGG                                                                         
AA                 ACC        -----            C    -     ---------AA      CGCAAACCACGCGGTTTTTACCCACCTTGCCCGACAAGGTGCCCTGTCTAAAACCCATAAAAACGCGGGGTGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050571

TAAGGGTGCGTTTGGTACGCAGACGGGACAGAACGGGACGGGACGGAACGAAGGTGTAATTTTTGAAAAAGACATGGGGTATATTTGTCTTAAAATGGTAAAACATTGTGTTCCACAGACGTGGAACAAACCCGTTCCAGGGGGGAGAGGTGGGGCGCAAAAATACCCAAAATCTGTCCCGTGGAACAGCCCGTTCCACCCATTTTTGGCGCACCAAACGCGGGACGAAACGCCTCGTCCCGTTCCGTCCCGTCCCGTCCCACGTACCAAACGCACCCTAA

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