Plant MITE

SE3050573

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_710
Malus domestica
SE3050573
PIF/harbinger
MadP6
MDC009966.257:3235-3587
TAA
G

Secondary structure and sequence

TSD TIR

5'

3'

TAATTGAAG  ACAAGCAAAGTATAGGTACCGTTTGGTACGCAGACGGGACGGAACGGAACGGAACGGGACGGAACGGAACGGGACGGGACGGGACGAGACGGGACGGGACGGGACGGGACGAGACGGGACGGGACGGAACGGATGATGTAAATATTGAAAAAGATAAGGAGAAGTTTTGTCATAAAATGT
         GC                                                                                                                                                                                    
         ||                                                                                                                                                                                    T
         TA                                                                                                                                                                                    
           TACCATGGCAAACCATGCACCCTGCCCTGCCCTGCCTTGCCTTGCTCGGCAAGGCAGGGTGCAAACCACGCGGATTTTTGACACTTTGCCCAACAGGGTACCCTGCTTTAAACCGACTAAAAAGCAAGGTGGAGAAGGGGGACCTTGCTGGGCAAGGTGTAGGCACCTTGTGTTTAAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050573

TAATTGAAGGCACAAGCAAAGTATAGGTACCGTTTGGTACGCAGACGGGACGGAACGGAACGGAACGGGACGGAACGGAACGGGACGGGACGGGACGAGACGGGACGGGACGGGACGGGACGAGACGGGACGGGACGGAACGGATGATGTAAATATTGAAAAAGATAAGGAGAAGTTTTGTCATAAAATGTTATAAATTTGTGTTCCACGGATGTGGAACGGGTCGTTCCAGGGGGAAGAGGTGGAACGAAAAATCAGCCAAATTTCGTCCCATGGGACAACCCGTTTCACAGTTTTTAGGCGCACCAAACGTGGGACGGAACGGCTCGTTCCGTTCCGTCCCGTCCCGTCCCACGTACCAAACGGTACCATAT

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