Plant MITE

SE3020574

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_711
Malus domestica
SE3020574
Mutator
MadM10
MDC022103.513:4075-4274
CTCTTTTTA
GGAGTAGGATTCTCTACCCTCCT

Secondary structure and sequence

TSD TIR

5'

3'

CTCTTTTTA    T      C           TATC  TCTA       A         ATTTG   -  TCACGGTTAAGCCACGTCAACATTTTATATTGA
         GGAG AGGATT TCTACCCTCCT    TC    CCCTTCC TCCCCTCCT     AAC CG                                 
         |||| |||||| |||||||||||    ||    ||||||| |||||||||     ||| ||                                  
         CCTC TCCTAA AGATGGGAGGA    AG    GGGAAGG AGGGGAGGA     AGT TG                                 
ATTTTTCTC    C      T           TAAM  -TAG       G         ----G   G  TAACAAAAAACAGAATAATAGASATATTTTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020574

CTCTTTTTAGGAGTAGGATTCTCTACCCTCCTTATCTCTCTACCCTTCCATCCCCTCCTATTTGAACCGTCACGGTTAAGCCACGTCAACATTTTATATTGAATTTTTTATASAGATAATAAGACAAAAAACAATGTGTGAGAGGAGGGGAGGGAAGGGGATGAMAATAGGAGGGTAGATAATCCTCCTCCCTCTTTTTA

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