SE3020584

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_721
  • Malus domestica
  • SE3020584
  • Mutator
  • MadM14
  • MDC022708.143:1811-2297
  • TTATAAGTA
  • TTATAAGTAGAGTAAATTGTAGCTATGGTCCCTTAACTTTAACTCAAATTGGAGCTATGGTCCCTCAACTAAAAATCCATTGTTCATTGGTCCCTGAACTCATCAAAACGTGCAGCTATGGTC

Secondary structure and sequence

TSD    TIR
5'



3'
        AGT               T                  C           CT                            C          G    C       C   C          CCTCAACTAAAAATCCATT   --      -   TCAACTTTAATTCAACTAGAGAAATGATCCCTTAACTTTAACCCAATTGTAGCAATGGTCATTCCAACATAACTCGTTTTGACAAAATTTTTGACG
   TTATA   AGAGTAAATTGTAGC ATGGTCCCTTAACTTTAA TCAAATTGGAG  ATGGTCCCTCAACTAAAAATCCATTGTT ATTGGTCCCT AACT ATCAAAA GTG AGCTATGGTC                   ACC  ATTGGT CCC                                                                                                
   |||||   ||||||||||||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||| ||||||||||                   |||  |||||| |||                                                                                                 
   AATAT   TCTCATTTAACATCG TACCAGGGAGTTGAAATT AGTTTAACCTC  TACCAGGGAGTTGATTTTTAGGTAATGA TAATCAGGGA TTGA TAGTTTT CAC TCGATATCAG                   GTA  TAAAGC GTT                                                                                                
ATG     ---               T                  -           AT                            -          G    A       A   A          --------------TAAAA   GT      A   TTAAAACAGTTTTATTCAATACAACCTTATTGGTAAATATATTAATCCCAGGGAGTTGAGTAGTTTCACACATTAATACCAGTAAAAGCAGTTGAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End