SE3020585

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_722
  • Malus domestica
  • SE3020585
  • Mutator
  • MadM10
  • MDC022308.224:17016-17226
  • TATTTGAGA
  • TTGAGAGGAGGCAGATTCTCTGCATTCCAGTGCCCTCCTGTTTGTGTGGTCACGGTTAAGCTACGTCAACATTTTATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT     -      C           -A     ------     C        -                                   TTAC    CC       CTTATT
   TTGAG AGGAGG AGATTCTCTGC  TTCCA      GTGCC TCCTGTTT GTGTGGTCACGGTTAAGCTACGTCAACATTTTATA    TATT  TTTTTGT      
   ||||| |||||| |||||||||||  |||||      ||||| |||||||| |||||||||||||||||||||||||||||||||||    ||||  |||||||       
   AGTTT TCCTCC TCTAAGAGACG  AGGGT      CACGG AGGACAAA CACACCAGTGCCAATTCGGTGCAGTTGTAAAATAT    ATAA  AAAAATA      
 AG     A      A           GG     GAAGGG     A        A                                   ----    -A       TCTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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