SE3020588

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_725
  • Malus domestica
  • SE3020588
  • Mutator
  • MadM10
  • MDC010845.430:4009-4235
  • ATTTATTAT
  • ATGGACAAGGATTGTCTGCCCTCCCACTTCCGGTGCCCTCCCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTATT                        C    C    GC     C  GCCCTCCTA                     C                  ACTATTYATTTTTGTCTT
       ATGGACAAGGATTGTCTGCCCTCC ACTT CGGT  CCTCC GT         TTTGTGTGGTCACGGTTAAAT ACGTCAACATTTTATATT                  
       |||||||||||||||||||||||| |||| ||||  ||||| ||         ||||||||||||||||||||| ||||||||||||||||||                  A
       TACCTGTTCCTAACAGACGGGAGG TGAA GCCA  GGAGG CA         AAACACACCAGTGCCAATTTG TGCAGTTGTAAAATATAA                  
TATTATT                        -    R    YA     A  ---------                     A                  CAAAAAAATATCTCTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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