SE3020590

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_727
  • Malus domestica
  • SE3020590
  • Mutator
  • MadM107
  • MDC019904.429:3206-3403
  • CATATTAAT
  • ATTAATGGACTAGGATTCTCTTCTCTCATTTTTCTATCTCCTTCCATCTTCTCTTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAT      ---   C               T         A         AT          CATATTCTTTTATTTTGTCTTTCTTTT    TATAAAA TAATATTAAATGTTGA
   ATTAAT   GGA TAGGATTCTCTTCTC CATTTTTCT TCTCCTTCC  CTTCTCTTCT                           GCTA       T                
   ||||||   ||| ||||||||||||||| ||||||||| |||||||||  ||||||||||                           ||||       |                 
   TAATTA   CCT ATCCTAAGAGAAGGG GTAAAAAGG AGGGGAAGG  GAGGAGAGGA                           TTGG       C                
         TAC   C               -         G         --          ----------------------TAAAC    ------- AATGTCAATTCGGTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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