SE3020591

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_728
  • Malus domestica
  • SE3020591
  • Mutator
  • MadM10
  • MDC012506.282:554-764
  • TTGTTTGCT
  • GTTTGCTGGAGTAGGATTCTCTCCCATCTTTTTTTTTCCTCCCCTTCCCTCCCCTCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  TT  -T   G              A          -   -------         C  C      ATT   A --   CACGGTTAAGCCACGTCAACATCATCTATT
  GT  GC  GGA TAGGATTCTCTCCC TCTTTTTTTT TCC       TCCCCTTCC TC CCTCCT   TGA T  GGT                              
  ||  ||  ||| |||||||||||||| |||||||||| |||       ||||||||| || ||||||   ||| |  |||                               
  CG  TG  CCT ATCCTAAGAGAGGG AGGAGAAAGG AGG       AGGGGAAGG AG GGAGGA   TGT A  AGA                              
 T  TT  TT   G              A          T   GAAAAGT         T  A      GAG   - AG   ATAAAACAGAAAGAGAACGATATTTTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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