Plant MITE

SE3020592

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_729
Malus domestica
SE3020592
Mutator
MadM12
MDC008638.389:12213-12444
CTTTAGATC
TTTAGATCGAACCAGGATCCTCTCCTGAGTAATTCCCTAGGGATCCTGCAACCATATCCGTTCATCGTATATCGTGCTGTCAGAAATC

Secondary structure and sequence

TSD TIR

5'

3'

 C      TC   C            C             ---------             C ATA         CG         CT     AAA  ---------A     AATTTAAATTTT
  TTTAGA  GAA CAGGATCCTCTC TGAGTAATTCCCT         AGGGATCCTGCAA C   TCCGTTCAT  TATATCGTG  GTCAG   TC          TTTAA            
  ||||||  ||| |||||||||||| |||||||||||||         ||||||||||||| |   |||||||||  |||||||||  |||||   ||          |||||             
  AGATTT  CTT GTCCTAGGAGAG ACTCGTTAAGGGA         TCCCTAGGACGTT G   AGGCAAGTA  ATATAGCAC  CAGTC   AG          TAAGT            
CT      -C   A            A             TCTCTAGGA             A AAC         AA         AT     AAA  CAATCCATGA     ATAAACTTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020592

CTTTAGATCGAACCAGGATCCTCTCCTGAGTAATTCCCTAGGGATCCTGCAACCATATCCGTTCATCGTATATCGTGCTGTCAGAAATCATTTAAAATTTAAATTTTAAAATTCAAATATGAATAGTACCTAACGAAAACTGACTACACGATATAAAATGAACGGACAAGATTGCAGGATCCCTAGGATCTCTAGGGAATTGCTCAAGAGAGGATCCTGATTCCTTTAGATC

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