Plant MITE

SE3020595

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_732
Malus domestica
SE3020595
Mutator
MadM108
MDC013761.405:2977-3175
AACTTTTAG
TTTAGAAGT

Secondary structure and sequence

TSD TIR

5'

3'

AACT         -----ACAAATC    A      A                 C   -              A        AACAGTCACACCCAATCAAATC
    TTTAGAAGT            TTCT CATCTA AAATCTTTGTGGCCTCT TGT TCTTTGATTTTATT AGCATGTC                      
    |||||||||            |||| |||||| ||||||||||||||||| ||| |||||||||||||| ||||||||                      A
    AGATTTTCA            AAGA GTGGGT TTTGGGAACACTGGAGA ACA GGAAACTAAAATAA TCGTATAG                      
             ACTCTCTCTCAA    C      C                 A   C              C        AATCCTAAACCATGAACTTCGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020595

AACTTTTAGAAGTACAAATCTTCTACATCTAAAAATCTTTGTGGCCTCTCTGTTCTTTGATTTTATTAAGCATGTCAACAGTCACACCCAATCAAATCAAGCTTCAAGTACCAAATCCTAAGATATGCTCAATAAAATCAAAGGCACAAAGAGGTCACAAGGGTTTCTGGGTGCAGAAAACTCTCTCTCAACTTTTAGA

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