SE3020597

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_734
  • Malus domestica
  • SE3020597
  • Mutator
  • MadM72
  • MDC022194.443:2676-2889
  • CATGTAATC
  • CATG

Secondary structure and sequence

TSD    TIR
5'



3' 
         TAATC           C   C   A    C        T             T      CC    ---          CAACGA      A  GGGG    CTC
     CATG     GGAATTGGATC TCT CGA GCAA CCCTCGGG TCCTCTTGACCGG GTTAGT  GTTG   GATTTTTATC      CTACAA TA    AGCT   
     ||||     ||||||||||| ||| ||| |||| |||||||| ||||||||||||| ||||||  ||||   ||||||||||      |||||| ||    ||||   T
     GTAC     CCTTAACCTAG AGA GCT CGTT GGGAGCCC AGGAGGACTGGTC CAATCA  CGAC   TTAAAAATAG      GATGTT AT    TTGA   
CTAAT    -----           A   C   C    T        T             C      CC    ACC          ATTACG      A  AATA    AAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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