SE3050604

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_741
  • Malus domestica
  • SE3050604
  • PIF/harbinger
  • MadP9
  • MDC021060.430:10350-10732
  • TAA
  • AGGGCTGGTTTGGTATTGCTGTGCTTTGAAAAAAAGCTGTTGTGAGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    C        TAT  CT      T          TG         TAAGCGGCTGT        AATAAGCG    TGAAATAAATCAGCAAAGTGTTTGGTAAACTTTTTTGTAAAAGTGCTTTTGAAAAAAAAAAAAACAGTCTGATAGTGGGTCTTTTCATTAAAGGAGCACTGTAGCTCCGTGTGCT
  AGGG TGGTTTGG   TG  GTGCTT GAAAAAAAGC  TTGTGAGAA           GCTGTGAG        GCTG                                                                                                                   
  |||| ||||||||   ||  |||||| ||||||||||  |||||||||           ||||||||        ||||                                                                                                                   T
  TCCC ACCAAACC   AC  CACGAA TTTTTTTTTG  GGTACTTTT           CGACACTC        TTCA                                                                                                                   
AA    C        CTC  TC      T          TG         --------TTT        --CCAAAA    CAAACCATTTGACTTTTTTTTTCCGAATAAAACCTTCGACGACACTCTTATTCGACTTTAGTTTCCTTTTTCGACTTCGACGATAAACGTCGAAACCTTTTGACCGAAAAAAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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