SE3020606

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_743
  • Malus domestica
  • SE3020606
  • Mutator
  • MadM10
  • MDC000298.371:3287-3526
  • TTCTTCATC
  • GGACAAGGATTGTCTGCCCTCCACTTCCGGTGCCCTTCCCGTGCCCTCCCTGTTTTGTGTGATCACGGTTAAGCCACGTCAACATTTTATATTGTTTTTTTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTTCATC             C                         C         C     T     A                 C            ---     -       AGATAT
         GGACAAGGATTGT TGCCCTCCACTTCCGGTGCCCTTCC GTGCCCTCC TGTTT GTGTG TCACGGTTAAGCCACGT AACATTTTATAT   TGTTT TTTTTAT      
         ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||   ||||| |||||||       
         CCTGTTCCTAACA ACGGGAGGTGAAGGCCACGGGAGGG CACGGGAGG ACAAA CATAC AGTGCCAATTCGGTGCA TTGTAAAATATA   ATAAA AAAAATA      
CTACTTCTT             A                         A         -     -     C                 A            ATG     T       GAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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