SE3020607

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_744
  • Malus domestica
  • SE3020607
  • Mutator
  • MadM74
  • MDC018611.51:7944-8370
  • CAAAATTTA
  • AAATTTAGAATAATATTTGACTACTCAAAATGAGTAGTAATTCCTACTCAAAATTT

Secondary structure and sequence

TSD    TIR
5'



3'
CA      -A            A     C   -        T     C            CTTAAAATTATTT     CAATGTAT   A   C  TTG      CAAAAC     A      A      C  A    M    CCTC          C            A           -       TGTTTAAAAACAATTGAACGGTATTGATAA
  AAATTT  GAATAATATTTG CTACT AAA ATGAGTAG AATTC TACTCAAAATTT             GTTGT        AGA CTT GT   TATGAT      CGTTT TATTAT AATCAT CT TAAA ATCA    TGCAAAAAAT AATTAAAATTAA GTCGTTTAGTC ATCAAAC                              
  ||||||  |||||||||||| ||||| ||| |||||||| ||||| ||||||||||||             |||||        ||| ||| ||   ||||||      ||||| |||||| |||||| || |||| ||||    |||||||||| |||||||||||| ||||||||||| |||||||                              A
  TTTAAA  CTTGTTATGAAC GATGA TTT TACTTATC TTAAG ATGAGTTTTAAG             TAGCG        TCT GAA CA   ATATTA      GCAAG ATGATA TTAGTG GA ATTT TAGT    ACGTTTTTTA TTAATTTTGATT CAGCAAATCAG TACATAA                              
 A      AC            C     A   C        C     A            --TATCATAAAAT     --------   C   A  TGA      ATATTA     C      C      T  C    C    AAAT          T            C           T       CATTGTTTATGTATCGGCCAAGCATTACGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End