SE3020609

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_746
  • Malus domestica
  • SE3020609
  • Mutator
  • MadM20
  • MDC011080.253:805-1021
  • TTTCAGAAA
  • TTCAGAAAGGATTTGGATCCTCTCCTGAGCCCAAGGAGAGGATCCTCCTAACCAAGATATGTGGGCCGTTGGATTTTCATCCAATAGCTATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
T   A                                    GA       A                           CA  C   A       TTATTATAACTTTAA    AT
 TTC GAAAGGATTTGGATCCTCTCCTGAGCCCAAGGAGAG  TCCTCCT ACCAAGATATGTGGGCCGTTGGATTTT  TC AAT GCTATAA               AGGG  
 ||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||  || ||| |||||||               ||||   
 AAG CTTTCCTAAACCTAGGAGAGGACTCGGGTTCCTCTC  AGGAGGA TGGTTCTGTGCACCCGGCAACCTAAAA  AG TTG CGATGTT               TCCC  
A   A                                    NN       C                           AC  A   C       -------------TG    TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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