Plant MITE

SE3020611

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_748
Malus domestica
SE3020611
Mutator
MadM8
MDC021631.155:13216-13402
ATTCAGCAA
GAGTAATGCTACGTAGACAATTTTTTTAGACCACATTTG

Secondary structure and sequence

TSD TIR

5'

3'

ATTCAGCAA           C T    A   TT      C  C     CAAG            -   --CTAATA       AGC  GTT   CA
         GAGTAATGCTA G AGAC ATT  TTTAGA CA ATTTG    TCATGTGATGTG TTA        TGAATTA   AC   AGT  
         ||||||||||| | |||| |||  |||||| || |||||    |||||||||||| |||        |||||||   ||   |||   
         CTCATTACGAT C TCTG TAG  AAATTT GT TAAAC    GGTATACTACAC AAT        ACTTAAT   TG   TCA  
AACGACTTA           C -    G   TT      A  A     ATMT            T   AACTACTA       -AA  AAT   CA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020611

ATTCAGCAAGAGTAATGCTACGTAGACAATTTTTTTAGACCACATTTGCAAGTCATGTGATGTGTTACTAATATGAATTAAGCACGTTAGTCAACACTTAAGTAATAATTCAATCATCAATAATCACATCATATGGTMTACAAATATGATTTAAATTGATGGTCTCCTAGCATTACTCATTCAGCAA

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