SE3020614

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_751
  • Malus domestica
  • SE3020614
  • Mutator
  • MadM10
  • MDC007779.353:2225-2407
  • CATGCGGAA
  • GCGGAAGGAGTAAGATTCTCTCCCCTTCCATCCCCTCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
 CAT   GAA      A             ----------------             ATTTAA  GGTTGTGATTACGCCACGTCTACATCTTGTTTTCAA
    GCG   GGAGTA GATTCTCTCCCCT                TCCATCCCCTCCT      AC                                    
    |||   |||||| |||||||||||||                |||||||||||||      ||                                     
    CGT   CCTCAT CTAAGAGAGGGGA                AGGTAGGGGAGGA      AG                                    
AAGG   -AC      C             GGATAATGGTAGGGGA             -----G  TGTGAGAAGAAAAATAGAATAAGGGATATATTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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