Plant MITE

SE3020618

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_755
Malus domestica
SE3020618
Mutator
MadM15
MDC009147.201:8290-8506
TATAACTTT
GGAACTGGATCCCCACCTGAGCATAGGGTGGGAATCCTCCTGAACG

Secondary structure and sequence

TSD TIR

5'

3'

TATAACTTT              A C               A          A  GATC      AC                  CGG      TAATTATA     T
         GGAACTGGATCCCC C TGAGCATAGGGTGGG ATCCTCCTGA CG    ATCTGG  CATTGAAATTTGATCCAA   CTACAA        ACTTT 
         |||||||||||||| | ||||||||||||||| |||||||||| ||    ||||||  ||||||||||||||||||   ||||||        ||||| A
         CCTTGGCCTAGGGG G ACTCGTATCCCACCC TAGGAGGACT GT    TAGACC  GTAACTTTAAACTAGGTT   GATGTT        TGGGA 
TTTCAATAT              A Y               C          M  RCGY      CY                  YRR      TGTCCRRC     G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020618

TATAACTTTGGAACTGGATCCCCACCTGAGCATAGGGTGGGAATCCTCCTGAACGGATCATCTGGACCATTGAAATTTGATCCAACGGCTACAATAATTATAACTTTTAGAGGGTCRRCCTGTTTGTAGRRYTTGGATCAAATTTCAATGYCCCAGATYGCRTGMTCAGGAGGATCCCCACCCTATGCTCAYGAGGGGATCCGGTTCCTATAACTTT

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